PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.RC5BB
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family bHLH
Protein Properties Length: 369aa    MW: 41095.4 Da    PI: 9.9228
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.RC5BBgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH48.91.1e-15204250455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   hn+ ErrRRdriN+++  L++l+P+a      K +Ka++L ++++Y+k+Lq
  Aradu.RC5BB 204 VHNQSERRRRDRINQKMKALQRLVPNA-----NKTDKASMLDEVIKYLKQLQ 250
                  5*************************8.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.15E-18198262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.276200249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-13204250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.1E-17204258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.37E-15205254No hitNo description
SMARTSM003533.1E-16206255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0016607Cellular Componentnuclear speck
GO:0003690Molecular Functiondouble-stranded DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MANNYDEIAE LTWENGQISM HGLSGLDPTS QKKPTWVNRA HDTLESIVQQ ATCKNKKSKL  60
TIKDNHAYVD VPTTTSSIVA SSGEHHQMVP TLSRKRSHSS YSDQQQHRRD VNYVSINNTN  120
RKCGVATASV TFCRDNNDVT TMMTWPSLDS GPRSLKNDKI LEEDSACQSG SEVRNNENDR  180
DGGKGETGQS KSSSVVRRNR TAAVHNQSER RRRDRINQKM KALQRLVPNA NKTDKASMLD  240
EVIKYLKQLQ AQIEMMMSVS MPQMIMQQQL QMSMLARSMA NNAPNPIRPL FPQLIQPTTT  300
IGAANTASAP MFLAPSLMIP SSTNASIPLP SASYGAATFA QPLNMDMLNN MAAFYSQQMN  360
HHQNNQIKP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1208213ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00571DAPTransfer from AT5G61270Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015937893.10.0PREDICTED: transcription factor PIF7-like isoform X2
TrEMBLK7KW241e-110K7KW24_SOYBN; Uncharacterized protein
STRINGGLYMA06G21495.11e-110(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF129992432
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.17e-36bHLH family protein